Hi, I'm Jonas!

I am currently a BioImage Analyst / Research Software Engineer at the SciLifeLab BioImage Informatics Facility at Uppsala University. I am a passionate developer of open-source software for quantiative bioimaging and life sciences research. Outside of the office, you can find me enjoying the great outdoors (e.g. hiking, skiing, paragliding).

Please do not hesitate to contact me for a full CV.

2023 – now
Uppsala, SE
BioImage Analyst / Research Software Engineer
SciLifeLab BioImage Informatics Facility (Uppsala University)
Bioimage analysis support, research software development for bioimaging applications
2022 – 2023
Zurich, CH
Post‑doctoral researcher
Bodenmiller Lab (ETH Zurich & University of Zurich)
Research software / napari plugin development for multiplexed tissue imaging applications
2017 – 2022
Zurich, CH
PhD in Systems Biology
Bodenmiller Lab / Life Sciences Graduate School (ETH Zurich & University of Zurich)
Doctoral thesis: "Multiplexed Tissue Image Processing and Spatial Single‑Cell Data Integration"
2014 – 2017
Zurich, CH
MSc in Computational Biology & Bioinformatics
ETH Zurich & University of Zurich
IBM Research Zurich (master thesis / internship)
Master thesis: "Spatio-temporal modeling of DNA replication"
2011 – 2014
Vienna, AT
BSc in Software & Information Engineering
Vienna University of Technology (TU Wien)
Research Institute of Molecular Pathology (IMP, bachelor thesis)
Bachelor thesis: "Chromatogram peak significance scoring and reconstruction"
2009 – 2014
Vienna, AT
Software developer (internship / part-time)
IT-eXperience GmbH
Development of B2B web services and clients for desktop and mobile platforms
2006 – 2011
Vienna, AT
Secondary education (Matura)
HTBLuVA Spengergasse (Track: Commercial Data Processing)
Vocational education in software development, project management and business administration